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1

Genome of Xanthomonas oryzae Bacteriophage Xp10: An Odd T-Odd Phage

Julia Yuzenkova, Sergei Nechaev, Jana Berlin, Dragana Rogulja, Konstantin Kuznedelov, Ross Inman, Arcady Mushegian, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.92 MB

english, 2003

2

Structure of Microcin J25, a Peptide Inhibitor of Bacterial RNA Polymerase, is a Lassoed Tail

Wilson, Kelly-Anne, Kalkum, Markus, Ottesen, Jennifer, Yuzenkova, Julia, Chait, Brian T., Landick, Robert, Muir, Tom, Severinov, Konstantin, Darst, Seth A.

Journal:

Journal of the American Chemical Society

Year:

2003

Language:

english

File:

PDF, 502 KB

english, 2003

3

Mechanism of Eukaryotic RNA Polymerase III Transcription Termination

Nielsen, S., Yuzenkova, Y., Zenkin, N.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.25 MB

english, 2013

4

Bacterial RNA polymerase caps RNA with various cofactors and cell wall precursors

Julius, Christina, Yuzenkova, Yulia

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.03 MB

english, 2017

5

Structure of Microcin J25, a Peptide Inhibitor of Bacterial RNA Polymerase, is a Lassoed Tail.

Kelly-Anne Wilson, Markus Kalkum, Jennifer Ottesen, Julia Yuzenkova, Brian T. Chait, Robert Landrick, Tom Kuir, Konstantin Severinov, Seth A. Darst

Journal:

Year:

2004

File:

PDF, 54 KB

2004

6

Stepwise mechanism for transcription fidelity

Yulia Yuzenkova, Aleksandra Bochkareva, Vasisht R Tadigotla, Mohammad Roghanian, Savva Zorov, Konstantin Severinov, Nikolay Zenkin

Journal:

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

7

Region 1.2 of the RNA polymerase σ subunit controls recognition of the −10 promoter element

Zenkin, Nikolay, Kulbachinskiy, Andrey, Yuzenkova, Yuliya, Mustaev, Arkady, Bass, Irina, Severinov, Konstantin, Brodolin, Konstantin

Journal:

The EMBO Journal

Year:

2007

Language:

english

File:

PDF, 477 KB

english, 2007

8

Low-molecular-weight inhibitors of bacterial DNA-dependent RNA polymerase

S. D. Zorov, J. V. Yuzenkova, K. V. Severinov

Journal:

Molecular Biology

Year:

2006

Language:

english

File:

PDF, 200 KB

english, 2006

9

Mapping of RNA Polymerase Residues that Interact with Bacteriophage Xp10 Transcription Antitermination Factor p7

Yulia Yuzenkova, Nikolay Zenkin, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 805 KB

english, 2008

10

Molecular Mechanism of Transcription Inhibition by Peptide Antibiotic Microcin J25

Karen Adelman, Julia Yuzenkova, Arthur La Porta, Nikolay Zenkin, Jookyung Lee, John T Lis, Sergei Borukhov, Michelle D Wang, Konstantin Severinov

Journal:

Year:

2004

Language:

english

File:

PDF, 428 KB

english, 2004

11

A Novel Bacteriophage-encoded RNA Polymerase Binding Protein Inhibits Transcription Initiation and Abolishes Transcription Termination by Host RNA Polymerase

Sergei Nechaev, Yulia Yuzenkova, Anita Niedziela-Majka, Tomasz Heyduk, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 409 KB

english, 2002

12

Optimized delivery of fluorescently labeled proteins in live bacteria using electroporation

Sustarsic, Marko, Plochowietz, Anne, Aigrain, Louise, Yuzenkova, Yulia, Zenkin, Nikolay, Kapanidis, Achillefs

Journal:

Histochemistry and Cell Biology

Year:

2014

Language:

english

File:

PDF, 1.82 MB

english, 2014

13

Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae

Yuzenkova, Y., Gamba, P., Herber, M., Attaiech, L., Shafeeq, S., Kuipers, O. P., Klumpp, S., Zenkin, N., Veening, J.-W.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.52 MB

english, 2014

14

Bacterial global regulators DksA/ppGpp increase fidelity of transcription

Roghanian, M., Zenkin, N., Yuzenkova, Y.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 5.26 MB

english, 2015

15

Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis

Yuzenkova, Y., Zenkin, N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

16

Mutations of Bacterial RNA Polymerase Leading to Resistance to Microcin J25

Journal:

Journal of Biological Chemistry

Year:

2002

Language:

english

File:

PDF, 1.37 MB

english, 2002

17

Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre

Roghanian, M., Yuzenkova, Y., Zenkin, N.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 5.12 MB

english, 2011

18

Tagetitoxin inhibits transcription by stabilizing pre-translocated state of the elongation complex

Yuzenkova, Y., Roghanian, M., Bochkareva, A., Zenkin, N.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 4.54 MB

english, 2013

19

Microcin J25 Uptake: His5 of the MccJ25 Lariat Ring Is Involved in Interaction with the Inner Membrane MccJ25 Transporter Protein SbmA

de Cristobal, R. E., Solbiati, J. O., Zenoff, A. M., Vincent, P. A., Salomon, R. A., Yuzenkova, J., Severinov, K., Farias, R. N.

Journal:

Journal of Bacteriology

Year:

2006

Language:

english

File:

PDF, 129 KB

english, 2006

20

Structure-Activity Analysis of Microcin J25: Distinct Parts of the Threaded Lasso Molecule Are Responsible for Interaction with Bacterial RNA Polymerase

Semenova, E., Yuzenkova, Y., Peduzzi, J., Rebuffat, S., Severinov, K.

Journal:

Journal of Bacteriology

Year:

2005

Language:

english

File:

PDF, 338 KB

english, 2005

21

Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence

Bochkareva, Aleksandra, Yuzenkova, Yulia, Tadigotla, Vasisht R, Zenkin, Nikolay

Journal:

The EMBO Journal

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

22

A new basal promoter element recognized by RNA polymerase core enzyme

Yuzenkova, Yulia, Tadigotla, Vasisht R, Severinov, Konstantin, Zenkin, Nikolay

Journal:

The EMBO Journal

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

23

Multiple active centers of multi-subunit RNA polymerases

Yuzenkova, Yulia, Roghanian, Mohammad, Zenkin, Nikolay

Journal:

Year:

2012

Language:

english

File:

PDF, 755 KB

english, 2012

24

Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis

Yulia Yuzenkova, Nikolay Zenkin and Jeffrey W. Roberts

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.52 MB

english, 2010

25

Bacteriophage Xp10 anti-termination factor p7 induces forward translocation by host RNA polymerase

Zenkin, Nikolay, Severinov, Konstantin, Yuzenkova, Yulia

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.47 MB

english, 2015

26

Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate

van Nues, Rob W., Castro-Roa, Daniel, Yuzenkova, Yulia, Zenkin, Nikolay

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 6.43 MB

english, 2016

27

Single-peptide DNA-dependent RNA polymerase homologous to multi-subunit RNA polymerase

Forrest, David, James, Katherine, Yuzenkova, Yulia, Zenkin, Nikolay

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.22 MB

english, 2017

28

RNA capping by mitochondrial and multi-subunit RNA polymerases

Julius, Christina, Riaz-Bradley, Amber, Yuzenkova, Yulia

Journal:

Year:

2018

Language:

english

File:

PDF, 841 KB

english, 2018

29

New Insights into the Functions of Transcription Factors that Bind the RNA Polymerase Secondary Channel

Zenkin, Nikolay, Yuzenkova, Yulia

Journal:

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

30

Noncanonical RNA-capping: Discovery, mechanism, and physiological role debate

Julius, Christina, Yuzenkova, Yulia

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2018

Language:

english

File:

PDF, 1.70 MB

english, 2018

31

Metabolic cofactors NADH and FAD act as non-canonical initiating substrates for a primase and affect replication primer processing in vitro

Julius, Christina, Salgado, Paula S, Yuzenkova, Yulia

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 3.94 MB

2020

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